![]() |
Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
|
Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.1G006600.3.p | ||||||||
Common Name | PRUPE_ppa020429mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 441aa MW: 49258.2 Da PI: 4.7646 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.9 | 3.2e-12 | 217 | 268 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e++++L+ Prupe.1G006600.3.p 217 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 268 79****************************...9*****************9995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-13 | 215 | 271 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.53E-13 | 215 | 272 | No hit | No description |
PROSITE profile | PS50888 | 15.428 | 216 | 267 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-16 | 216 | 281 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-9 | 217 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-9 | 222 | 273 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00551 | 365 | 429 | No hit | No description |
PROSITE profile | PS51671 | 8.849 | 365 | 440 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010377 | Biological Process | guard cell fate commitment | ||||
GO:0045597 | Biological Process | positive regulation of cell differentiation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051782 | Biological Process | negative regulation of cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 441 aa Download sequence Send to blast |
MEKEENNYSA FMPPGNFNNL DYTLDHHHDE DQQMMKSRID ETPSENNNGM VNYLMNNHHQ 60 LQQQQQQMST QLAPAGFCGS TSTSFDKLSF ADVMQFADFG PKLGLNQTKI SEEEPSGVDP 120 VYFLKFPVLN DKFDNDVMVP QAEERFTGLG EEGKTKSMEE DQDEEARVSG SNSVQQLQFL 180 GEDLENNPRG GVEPEPAAKN KRKRPRTTKT TQEVESQRMT HIAVERNRRK QMNEHLRVLR 240 SLMPGSYVQR GDQASIIGGA IEFVRELEQL LQCLESQKRR RLLGEAPRHE VGESAGAMAM 300 AVMPAVQAAQ GGSGGPLIFP AANLPVNPND PIKFVDFETG LREETAENKS CFADVEVKVL 360 GFDAMIKILS QRRPGQLIKA IAALEDLQLN ILHTNITTIE QTVLYSFNVK VESESRFTAE 420 DIATSVQQIF SFIHANTASM * |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 217 | 228 | RMTHIAVERNRR |
2 | 277 | 281 | KRRRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008224494.1 | 0.0 | PREDICTED: transcription factor FAMA isoform X2 | ||||
Swissprot | Q56YJ8 | 1e-145 | FAMA_ARATH; Transcription factor FAMA | ||||
TrEMBL | M5Y1I5 | 0.0 | M5Y1I5_PRUPE; Uncharacterized protein | ||||
STRING | POPTR_0001s32160.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24140.1 | 1e-122 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.1G006600.3.p |
Entrez Gene | 18793397 |